Category Archives: Science

Neil Shubin – Your Inner Fish: A Journey into the 3.5-Billion-Year History of the Human Body

Neil Shubin – Your Inner Fish: A Journey into the 3.5-Billion-Year History of the Human Body

Animals all come from the sea. Spinal cords, backbones, bones themselves, our familiar trunk-and-limb anatomical structure, all evolved from fish. Even today, human embryos briefly have gills early in development, which is something to think about the next time you touch the side of your neck. Lungs and swim bladders are evolutionary cousins, and fish could not have made the move to land without them. Eyes first developed back in our seafaring days, and our lenses are still better adapted to seeing through water than air. As distant and diverse as life can be on Earth, we have more in common than we think. Shubin makes that point as well as anyone, sometimes in amusing fashion.

Richard Dawkins – The Blind Watchmaker: Why the Evidence of Evolution Reveals a Universe without Design

Richard Dawkins – The Blind Watchmaker: Why the Evidence of Evolution Reveals a Universe without Design

Possibly the best book ever written on evolution, for the delivery as much as the content. Dawkins uses compelling, relatable examples, grounded partly in his own experiments, to show how elaborate designs can emerge without a designer. He does it bit by bit, working with the reader to tease out insights, revealing more as he goes until everything ties together. Dawkins can sometimes be a bit strident, but he is a master educator. His illustrations of biomorphs and his explanation of how something as complex as the human eye can arise without an intelligent designer are two of the standout discussions in the book. Highly, highly recommended.

James S.A. Corey – Abbadon’s Gate: The Expanse, Vol. 3

James S.A. Corey – Abbadon’s Gate: The Expanse, Vol. 3

The best of the series so far. The protomolecule that was the major plot axis of the first two books forms a 1,000 km-wide ring between Uranus and Neptune’s orbits. The space inside the ring seems to be some kind of wormhole leading to a million-kilometer wide space with more than a thousand other rings spread along its edges. Earth, Mars, and the Belt waver between war and peace, both inside and outside the ring space. Protagonist James Holden  and his crew, along with a few other characters try to keep the peace, and try to ward off a vengeful character whose father and sister figured prominently in the first two volumes. The drama of a continually worsening situation keeps building and building, with some elaborate physics involved—gravity and inertia turn out to be excellent plot devices. The final battle scene is fantastically done—one of the best I’ve read.

Matt Ridley – Genome: The Autobiography of a Species in 23 Chapters

Matt Ridley – Genome: The Autobiography of a Species in 23 Chapters

This is an older book, from 1999, and some parts are dated now. It is still excellent. The book has 23 chapters, one for each pair of chromosomes in the human genome. Ironically, this organizational conceit gives Ridley the freedom to take a more scattershot approach. He tells about genes found in each chromosome that affect certain traits. Since our genes were designed without a designer, chromosomes don’t have individual themes, and genes controlling certain traits can be found in multiple chromosomes.

Ridley does what he can with what the material provides him, but this randomness actually makes some of his evolutionary arguments stronger, a fact he takes full advantage of. He also goes on frequent tangents about how a given chromosome’s traits might be useful or not, how they have impacted human history, how they connect various species and common ancestors, how mutations work, and many other concepts in evolutionary biology.

Mark Miodownik – Stuff Matters: Exploring the Marvelous Materials That Shape Our Man-Made World

Mark Miodownik – Stuff Matters: Exploring the Marvelous Materials That Shape Our Man-Made World

A highly enjoyable introduction to materials science. Miodownik is an academic at the University College London. He is also a fantastic popular-level writer. The ten chapters each cover a different type of solid material, from steel to glass ceramics to concrete to diamonds and carbon fiber. To explain why these solids are interesting and important, Miodownik incorporates the history of invention, how they have affected industry and architecture. He gives comprehensible explanations of how different molecular shapes can make a substance brittle or malleable, or can affect its friction coefficient, as with Teflon or graphene, and more.

As a layman reader with no expertise in materials science and limited understanding of molecular chemistry, I learned more per page of this book than from anything else I’ve read in years, and sparked my interest in an entirely new discipline. This is just about the highest praise I can give a book, and I could not recommend it more highly. Miodownik’s just-released sequel on liquids, Liquid Rules, deserves similar praise.

Matt Ridley – The Red Queen: Sex and the Evolution of Human Nature

Matt Ridley – The Red Queen: Sex and the Evolution of Human Nature

In Lewis Carroll’s Through the Looking Glass, Alice races against a red queen. They have to run faster and  faster just to stay where they are. This paradox is a common analogy in science books to the point of being a cliché. But it got that way for a reason. Predators and prey are constantly evolving sharper teeth, adaptive defense strategies, hunting techniques, camouflage, new ways to exploit food sources, and more. The result of all this effort and adaptation is to keep survival rates pretty much the same. A similar red queen story can be told about our immune systems, which must constantly adapt to fight microbes, who are themselves constantly adapting to keep up with our immune systems.

Ridley, a top-notch science writer and something of a polymath, develops the red queen conceit as well as anybody. While The Rational Optimist is his best book, The Red Queen takes a strong second place. Red queen stories, Ridley notes, also appear in public policy, such as in arms races, where governments spend billions of dollars per year building weapons and researching new ones. This is all so they can keep geopolitical dynamics more or less the same as they are now. Elections are the same way, as billions of dollars get spent every cycle for just a few percentage points swing one or the other, which can easily be reversed the next time around. In the private sector, companies have to adapt and innovate just to keep the doors open.

Charles Darwin – On the Origin of Species

Charles Darwin – On the Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for Life

There is something to be said about reading primary sources. In this case, it is surprisingly readable. For a book about theory, Darwin is heavily empirical. Every facet of natural selection he brings up in the book is illustrated by real-life examples from nature, including animals, plants, fungi, and more. In a way it’s an Attenborough-esque nature tour, with more depth and a unifying theme.

The book stands up better than I expected. Science has advanced much in the last 160 years, but those advances are more updates and expansions than a wholesale rebuilding of natural selection theory. The biggest advances have been in genetics; the Origin of Species’ biggest shortcomings are in that area, though that isn’t necessarily Darwin’s fault.

Darwin also had a charming humility. His personality was more shy and retiring than brash and combative, and it showed in his writing. He’s hard to hate as a person, and his lack of dogmatism and certainty would in most cases be disarming. But considering the uproar he caused, that turns out not to have been the case. Darwin went noticeably out of his away to avoid mentioning the God hypothesis, though he does allude several times to the need for longer-than-biblical time scales for natural selection processes to operate. Even so, critics pounced. Even today, some people reject evolutionary thinking, though nearly always for religious rather than scientific reasons.

As with Adam Smith, the ratio of people who have strong opinions about Darwin to the people who have actually read him is very large. As a result, popular conceptions of his views tend not to be entirely accurate. I encourage interested readers to improve that ratio and read the book. The Origin of Species turns out to have literary value as well as scientific, and there is something to be learned from the delivery as well as the content.

James S.A. Corey – Leviathan Wakes (The Expanse, Book 1)

James S. A. Corey – Leviathan Wakes (The Expanse, Book 1)

The Expanse is a science fiction show I recently discovered and rather enjoy. People began colonizing the solar system a few centuries before the series begins. Earth is under a global UN government and prosperous, if corrupt. Mars declared its independence some time ago. It was not peaceful, and tension lingers. Out in the, ahem, expanse of the asteroid belt and beyond is where this book takes place.

People have colonized asteroids, several moons around Jupiter and Saturn, and built several major space stations. Roughly 100 million people live in the Belt, but is small and backwards compared to Earth’s 30 billion population. Resources such as air and water are precious, and despite incredible solar system-wide wi-fi, the Belt isn’t as prosperous as the inner planets. Life is hard and dangerous, and a lot of decent people are also kind of sketchy; they have to be. Life expectancy for Belters is just 68, compared to 123 on Earth. native-born Belters are noticeably taller and skinnier than Inners due to growing up in lower gravity, marking them apart physically as well as culturally. They have been in space long enough to develop their own distinct patois, which is one of several nice touches that describe their growing cultural distance from Earth.

The Belters do not have an independent nation, but there is an IRA-style independence movement, the Outer Planet Alliance, or OPA. It is decentralized, uncoordinated, often violent, doesn’t necessarily have a clear leader, and is prone to factions and infighting. Inner planet governments have various interests and presences throughout the Belt. Sometimes they treat Belters well, and sometimes they don’t. Same with numerous mining companies, security contractors, and other businesses.

The protagonists are a plucky four-person ship crew who have origins from across the system, plus a hard-boiled Belter ex-detective from Ceres Station. They have different personality types and different philosophies, and while they are mostly good they also have their flaws. Through no fault of their own, they find themselves right in the middle of these tricky geopolitical dynamics. They try to stop a brewing system-wide three-way war while dealing with a number of other potentially lethal plot developments.

Amazon founder Jeff Bezos is enough of a fan that when the SyFy channel declined to renew The Expanse for a fourth season, he brought the show over to Amazon’s Prime streaming service. I enjoyed watching the first three seasons recently, and saw that the books on which it is based were on sale. The show is not a shot-for-shot remake of the books, though some parts did read like a retread. On the plus side, books have fewer space, time, and special effects budget constraints than television, so the characters and the fictional universe are developed more fully than in the show. The science parts of the science fiction are not this series’ drawing card, but they are more thoroughly explained and are apparently quite accurate, at least by speculative fiction standards.

I enjoyed it enough that I will continue with the book series, and will carve out some time for the tv show’s new season when that comes out later this year. Highly recommended if you’re into that sort of thing.

Nathan H. Lents – Human Errors: A Panorama of Our Glitches, from Pointless Bones to Broken Genes

Nathan H. Lents – Human Errors: A Panorama of Our Glitches, from Pointless Bones to Broken Genes

A book that can be amusing, but also points out the limitations of design without a designer. That said, organisms as they are almost certainly far better off than if they were the products of design with a designer. Well worth a read for that reason, but mostly because it’s fun to know about bodily quirks and maladies we all share for no apparent reason. Part of reading this book is taking a bit of delight in our own misfortunes.

We humans are doomed to have bad knees and back problems because the human body is not fully adapted to bipedalism. Our lack of a protruding snout (facial prognathism), such as most other animals have, dooms us to endless colds and sinus infections. We have the same piping back there as other animals, but in us it is compressed and shifted around in ways no plumber would design. This evolutionary quirk is why we get sick so often, even as our household cats and dogs rarely do.

One minor, Seinfeld-esque example I found personally relevant is that some people have the ability to voluntarily control a small muscle near the ear drum, causing a low rumbling sound kind of like muffled thunder. I am one of those people. The weird part is because it’s just a small muscle flexing inside one’s head, nobody else can hear the rumbling, even though to the hearer it can be loud enough to drown out conversation. It also has an involuntary component, in my case triggered by yawning, sneezing, and bright lights–those mouth and eye movements also work the muscle in question. I’ve silently wondered since childhood what causes this; it’s apparently just a random mutation some people have. Other readers will likely have similar “oh, that’s what that is!” moments.

David Quammen – The Tangled Tree: A Radical New History of Life

David Quammen – The Tangled Tree: A Radical New History of Life

A book on evolution that is causing some waves. In standard Darwinian evolution, genetic traits and mutations are passed on to the next generation only if they affect gametes—sperm and eggs. This is called vertical evolution. A mutation in someone’s skin cells, for example, is non-heritable. Lamarckian evolution, long since disproved, posited that such things could, in fact, be passed on. Some Lamarckians even posited that things like memories or learned aversions could be genetically passed on from one organism to another.

This turned out not to be true. But as scientists are now discovering, there actually is a mechanism for genetic change during the same generation, and a way to pass genetic information horizontally from one cell or organism to another during the same generation, rather than vertically through the generations. This is not Lamarckian evolution in the old sense, but it is conceptually related.

The key to this horizontal evolution is in the large swathes of junk DNA in every organism’s genomes. These lengthy patches don’t activate any traits or seem to do anything. A few do, but most don’t. The new thinking, since 1980 or so and still being tested, is that much of our junk DNA, though not all of it, does not come from mutations. It comes from retroviruses that invade cells and merge with local DNA.

This happens all the time throughout the body. Such mergers are usually genetic gibberish and do nothing. But occasionally the additional code can accidentally cause new characteristics to emerge. But these aren’t passed on to descendants unless they happen to hit the lottery by merging not just with a gamete, but the rare gamete that ends up being fertilized. Despite odds of less than one-in-a-trillion-trillion, these lightning strikes have happened often enough that retroviral junk DNA makes up a sizable portion of every plant and every animal’s genetic code, though the process has taken about two billion years. It’s a good the odds of this happening are so small, otherwise our DNA would be almost endless by this point!

This revelation, especially as concerns non-gamete cells, may someday have significant medical applications, from HIV treatment to cancer. The line between viral diseases and genetic diseases may be a blurry one. But it is too soon to tell, and Quammen could go a bit further in tamping down speculation. Lamarck isn’t vindicated, but he wasn’t entirely wrong, either.

Quammen explains, far better than I can, that this discovery has profound implications for our place in the tree of life, and even the very shape that tree takes. All life is even more deeply interconnected than we already thought. Quammen also tells the story of how this theory of horizontal evolution was thought to be quackery just a few years ago, but is rapidly becoming mainstream thinking among evolutionary biologists. Much of the research happened in Wisconsin, where I was born, and in Illinois, where I now live, which is a nice little coincidence.

Note, however, that horizontal evolution does not displace traditional natural selection over generations. It adds to it.